Duke University has posted images of a Gospel of John commentary dated to 1540. The format includes the Scripture text written in different color, while the commentary text is indented. I was not able to identify this manuscript with any in the Liste, and do not know whether or not it should be considered for inclusion as it is not technically a continuous text manuscript of John. However, the Greek text of the gospel seems to be more or less compete and distinguished from the commentary.
Duke shelf number: Greek MS 053
Since this is a commentary (different from catenae) of a single author, Theophylactus, it won't be added to the Liste.